PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024215.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 475aa    MW: 51338.8 Da    PI: 6.9538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024215.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000723643971654
                 HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 i +++  L++++ +      +K + a++L ++++YIk L
  Do024215.1 364 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 397
                 667889999999887.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.061348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-7363406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-4363402No hitNo description
SuperFamilySSF474599.03E-9363410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MHLHAAGAVH LQYFMPRHQP QEATDLQAQD SSSAVCRRSS SSTSPAATMW AEYHHRAAHA  60
AALQTASSSA SSFPSWSSPY AGTTAALLGA AGSAFATDAS SSPDLRLPAA GEHGHGHAWS  120
QHGEQSNSTC YRENFLDLLA SKNVTQEMFE DVPGGHYAAQ ALPGRLGAGS DAAPIKYEVA  180
GSPLFFGSTT PVMHQQGMNM AGCTPCYPYA DHHQMKEGSN QQQELETPAM TSFLQQLSSN  240
ASVGMHASLD YSGIGLDKIC QEGRAMEGSS FGMRSLPDLS SFSGYRSNAE STSSVQPYLR  300
SSNLSDSSKQ EQDIVSARCS SSGSGAVSDR KKRPSEEKTS TVKKSKQEGS KASPPKQQVP  360
KVKIGEKITA LQQIVSPFGK TDTASVLFET IKYIKFLHEQ VQLLSEPYTN SSRNKGNLPW  420
VVEHAETSKQ GDHQAEHDLR DRGLCLVPVS WTPEVYRDGT AMDYWTPAYR GCLYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0429371e-171BT042937.1 Zea mays full-length cDNA clone ZM_BFc0067L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953415.10.0PREDICTED: uncharacterized protein LOC101779384
TrEMBLK3YS190.0K3YS19_SETIT; Uncharacterized protein
STRINGSi017063m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12698910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.12e-41bHLH family protein